Paquet : libwfa2-0t64 (2.3.3-2.1) [debports]

[ Paquet source :  ]

exact gap-affine algorithm (shared library)

The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage of homologous regions between the sequences to accelerate the alignment process. Unlike to traditional dynamic programming algorithms that run in quadratic time, the WFA runs in time O(ns+s^2), proportional to the sequence length n and the alignment score s, using O(s^2) memory (or O(s) using the ultralow/BiWFA mode). Moreover, the WFA algorithm exhibits simple computational patterns that the modern compilers can automatically vectorize for different architectures without adapting the code. To intuitively illustrate why the WFA algorithm is so interesting, look at the following figure. The left panel shows the cells computed by a classical dynamic programming based algorithm (like Smith-Waterman or Needleman Wunsch). In contrast, the right panel shows the cells computed by the WFA algorithm to obtain the same result (i.e., the optimal alignment).

Autres paquets associés à libwfa2-0t64

• dep: libc6 (>= 2.17) [x32]

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

  dep: libc6 (>= 2.34) [hppa, m68k]

  dep: libc6 (>= 2.37) [sh4]

• dep: libgcc-s1 (>= 3.0) [sh4, x32]

  bibliothèque de prise en charge de GCC

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  bibliothèque de prise en charge de GCC

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  bibliothèque de prise en charge de GCC

• dep: libstdc++6 (>= 5.2)

  bibliothèque standard C++ de GNU v3

Télécharger libwfa2-0t64

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
hppa (portage non officiel)	63,2 ko	198,0 ko	[liste des fichiers]
m68k (portage non officiel)	51,6 ko	157,0 ko	[liste des fichiers]
sh4 (portage non officiel)	62,4 ko	215,0 ko	[liste des fichiers]
x32 (portage non officiel)	59,1 ko	177,0 ko	[liste des fichiers]