Paquet : edlib-aligner (1.2.7-6 et autres)

[ Paquet source : libedlib  ]

edlib sequence alignment tool using edit distance

Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.

Features of libedlib

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

Autres paquets associés à edlib-aligner

• dep: libc6 (>= 2.38)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libedlib1 (= 1.2.7-6+b2)

  library for sequence alignment using edit distance

• dep: libgcc-s1 (>= 3.5)

  bibliothèque de prise en charge de GCC

• dep: libstdc++6 (>= 5.2)

  bibliothèque standard C++ de GNU v3

Télécharger edlib-aligner

Télécharger pour toutes les architectures proposées

Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
armhf	1.2.7-6+b2	20,4 ko	46,0 ko	[liste des fichiers]