Paquet : libseqlib-dev (1.2.0+dfsg-11 et autres)

[ Paquet source : libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Étiquettes: Développement de logiciel: Bibliothèques, Rôle: Bibliothèque de programmation

Autres paquets associés à libseqlib-dev

• dep: libbwa-dev

  fichiers source du dispositif d'alignement Burrows-Wheeler

• dep: libfml-dev

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• dep: libhts-dev

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• dep: libjsoncpp-dev

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• dep: libseqlib2 (= 1.2.0+dfsg-11+b2)

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

• dep: libssw-dev

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  un paquet virtuel est également fourni par libssw-dev

• dep: zlib1g-dev

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Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	1.2.0+dfsg-11+b2	216,1 ko	1 186,0 ko	[liste des fichiers]