Paquet : toppred (1.10-7)

[ Paquet source : toppred  ]

transmembrane topology prediction

Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm.

Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro.

Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png

The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable.

This program is a new implementation of the original toppred program, based on G. von Heijne algorithm

Autres paquets associés à toppred

• dep: libc6 (>= 2.17) [arm64]

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

  dep: libc6 (>= 2.4) [non arm64]

• dep: libgd3 (>= 2.1.0~alpha~)

  bibliothèque graphique GD

• dep: libpng16-16 (>= 1.6.2-1)

  bibliothèque PNG –⋅exécutable (version⋅1.6)

• dep: zlib1g (>= 1:1.1.4)

  Bibliothèque de compression - binaires

Télécharger toppred

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	60,9 ko	151,0 ko	[liste des fichiers]
arm64	59,5 ko	147,0 ko	[liste des fichiers]
armhf	58,0 ko	135,0 ko	[liste des fichiers]
i386	62,0 ko	151,0 ko	[liste des fichiers]