Paquet : repeatmasker-recon (1.08-4)

[ Paquet source : repeatmasker-recon  ]

finds repeat families from biological sequences

The RECON package implements a de novo algorithm for the identification of repeat families from biological sequences.

The program implements an approach for the de novo identification and classification of repeat sequence families that is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. The extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. When tested on the human genome, this approach was able to properly identify and group known transposable elements. The program, should be useful for first-pass automatic classification of repeats in newly sequenced genomes.

Autres paquets associés à repeatmasker-recon

• dep: libc6 (>= 2.17) [arm64]

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

  dep: libc6 (>= 2.7) [non arm64]

• dep: perl

  langage de rapports et d'extractions pratiques de Larry Wall

Télécharger repeatmasker-recon

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	98,6 ko	235,0 ko	[liste des fichiers]
arm64	94,0 ko	211,0 ko	[liste des fichiers]
armhf	93,8 ko	183,0 ko	[liste des fichiers]
i386	100,9 ko	247,0 ko	[liste des fichiers]