Paquet : pbgenomicconsensus (2.3.2-5)

[ Paquet source : pbgenomicconsensus  ]

Pacific Biosciences variant and consensus caller

The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides.

This package is part of the SMRTAnalysis suite

Autres paquets associés à pbgenomicconsensus

• dep: python

  langage interactif de haut niveau orienté objet (version Python2)

• dep: python-pbgenomicconsensus (= 2.3.2-5)

  Pacific Biosciences variant and consensus caller (Python 2)

• dep: python-pkg-resources

  découverte de paquets et accès aux ressources avec pkg_resources

• rec: python-consensuscore2

  generate consensus sequences for PacBio data -- Python 2

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	33,5 ko	77,0 ko	[liste des fichiers]