Paquet : libfastahack-dev (0.0+git20160702.bbc645f+dfsg-6)

[ Paquet source : libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Étiquettes: Développement de logiciel: Bibliothèques, Rôle: Bibliothèque de programmation

Autres paquets associés à libfastahack-dev

• dep: libfastahack0 (= 0.0+git20160702.bbc645f+dfsg-6)

  library for indexing and sequence extraction from FASTA files (lib)

Télécharger libfastahack-dev

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	23,7 ko	116,0 ko	[liste des fichiers]
arm64	23,5 ko	112,0 ko	[liste des fichiers]
armhf	22,9 ko	91,0 ko	[liste des fichiers]
i386	25,3 ko	97,0 ko	[liste des fichiers]