Paquet : libjellyfish-perl (2.2.10-2)

[ Paquet source : jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Étiquettes: Développement de logiciel: Programmation Perl, Bibliothèques, Mis en œuvre en: implemented-in::c, implemented-in::perl, Rôle: Bibliothèque de programmation

Autres paquets associés à libjellyfish-perl

• dep: libc6 (>= 2.17)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  bibliothèque de prise en charge de GCC

• dep: libjellyfish-2.0-2

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: perl (>= 5.28.1-3)

  langage de rapports et d'extractions pratiques de Larry Wall

• dep: perlapi-5.28.1

  paquet virtuel fourni par perl-base

Télécharger libjellyfish-perl

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
arm64	51,6 ko	168,0 ko	[liste des fichiers]