Paquet : bbmap (38.90+dfsg-1)

[ Paquet source : bbmap  ]

short read aligner and other bioinformatic tools

BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels.

BBMap is multithreaded as well as the other tools bundled into this package for instance:

BBNorm: Kmer-based error-correction and normalization tool.

Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity.

Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s.

BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file.

Autres paquets associés à bbmap

• dep: libmpj-java

  Java library for parallel applications for multicore processors and clusters

• rec: pigz

  implémentation parallèle de gzip

Télécharger bbmap

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	5 394,0 ko	6 138,0 ko	[liste des fichiers]