Paquet : simkamin (1.5.3-7)

[ Paquet source : simka  ]

approximate comparative metagenomics method dedicated to NGS datasets

Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them.

The difference with Simka stands in the fact that SimkaMin outputs approximate (but very similar) results by subsampling the kmer space. With this strategy, and with default parameters, SimkaMin is an order of magnitude faster, uses 10 times less memory and 70 times less disk than Simka.

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• dep: python3

  interactive high-level object-oriented language (default python3 version)

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	31,5 ko	385,0 ko	[liste des fichiers]