Paquet : python3-freecontact (1.1-6 et autres)

[ Paquet source : python-freecontact  ]

fast protein contact predictor - binding for Python3

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Python3 binding.

Autres paquets associés à python3-freecontact

• dep: libboost-python1.74.0 (>= 1.74.0+ds1)

  bibliothèque Boost.Python

• dep: libboost-python1.74.0-py311

  paquet virtuel fourni par libboost-python1.74.0

• dep: libc6 (>= 2.32)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libfreecontact0v5 (>= 1.0.21)

  fast protein contact predictor library

• dep: libgcc-s1 (>= 3.5)

  bibliothèque de prise en charge de GCC

• dep: libstdc++6 (>= 11)

  bibliothèque standard C++ de GNU v3

• dep: python3 (<< 3.12)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.11~)

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Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
armhf	1.1-6+b4	67,2 ko	215,0 ko	[liste des fichiers]