Paquet : resfinder (4.3.0-1)

[ Paquet source : resfinder  ]

identify acquired antimicrobial resistance genes

ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.

ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.

Autres paquets associés à resfinder

• dep: kma

  mapping genomic sequences to raw reads directly against redundant databases

• dep: ncbi-blast+-legacy

  script d’appel de legacy de BLAST du NCBI

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-cgecore

  Python3 module for the Center for Genomic Epidemiology

• dep: python3-cgelib

  Python3 code to be utilized across the CGE tools

• dep: python3-dateutil

  extensions puissantes du module datetime standard de Python⋅3

• dep: python3-git

  Python library to interact with Git repositories

• dep: python3-tabulate

  pretty-print tabular data in Python3

• dep: resfinder-db

  base de données de Resfinder composée d’une base soigneusement choisie de gènes de résistance acquis

Télécharger resfinder

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	65,2 ko	400,0 ko	[liste des fichiers]