Paquet : golang-github-brentp-irelate-dev (0.0.1+ds-1)

[ Paquet source : golang-github-brentp-irelate  ]

Streaming relation testing of sorted files of intervals

Helps to relate (e.g. intersect or by distance) sets of intervals. For example, if the nearest gene to a set of ChIP-Seq peaks needs to be reported, BEDTools does this extremely well, irelate is an attempt to provide an API so that users can write their own tools with little effort in go.

Performance irelate is quite fast, but use PIRelate for parallel intersection. It is less flexible than irelate, but skips parsing of database intervals for sparse regions in the query. In addition, it has very good (automatic) parallelization.

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