Paketti: cwltool (3.1.20241024121129-1)

[ Source: cwltool  ]

Common Workflow Language reference implementation

This is the reference implementation of the Common Workflow Language standards.

The CWL open standards are for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, Physics, and Chemistry.

The CWL reference implementation (cwltool) is intended to be feature complete and to provide comprehensive validation of CWL files as well as provide other tools related to working with CWL descriptions.

Tagit: System Administration: Automation and Scheduling, Virtualization, Field: field::astronomy, field::biology, field::biology:bioinformatics, field::biology:molecular, Structural Biology, field::medicine, field::physics, Implemented in: Python, User Interface: interface::commandline, role::program, Tiede: Calculation, Scope: Utility, Class of system: system::cloud, system::laptop, Server, Virtual, Purpose: use::analysing, use::filtering, Supports Format: Need an extra tag, Works with: works-with::semantic-data, works-with::software:package

Muut pakettiin cwltool liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-arcp

  (Archive and Package) URI parser and generator

• dep: python3-argcomplete

  bash/zsh tab completion for argparse (for Python 3)

• dep: python3-coloredlogs

  colored terminal output for Python 3's logging module

• dep: python3-cwl-utils (>= 0.32)

  Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2

• dep: python3-mypy-extensions

  Experimental type system extensions for mypy typechecker (Python 3)

• dep: python3-prov

  W3C Provenance Data Model (Python 3)

• dep: python3-psutil

  module providing convenience functions for managing processes (Python3)

• dep: python3-pydot

  Python interface to Graphviz's dot

• dep: python3-pyparsing

  alternative to creating and executing simple grammars - Python 3.x

• dep: python3-rdflib (>> 6)

  Python 3 library containing an RDF triple store and RDF parsers/serializers

• dep: python3-requests

  elegant and simple HTTP library for Python3, built for human beings

• dep: python3-ruamel.yaml

  Roundtrip YAML parser/emitter (Python 3 module)

• dep: python3-schema-salad (>= 8.4.20230808163024)

  Schema Annotations for Linked Avro Data (SALAD)

• dep: python3-setuptools

  Python3 Distutils Enhancements

• dep: python3-spython

  Command line Python tool for working with Singularity

• rec: nodejs

  evented I/O for V8 javascript - runtime executable

• sug: cwltool-doc

  Common Workflow Language reference implementation -- docs

• sug: podman

  tool to manage containers and pods

  tai docker.io

  Linux container runtime

  tai singularity-container

  Paketti ei saatavilla

Imuroi cwltool

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	499.0 kt	5,894.0 kt	[tiedostoluettelo]