Paketti: seaview (1:5.0.5-2 ja muut)
Links for seaview
Debian-palvelut:
Imuroi lähdekoodipaketti seaview:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Charles Plessy (Laadunvalvontasivu)
- Andreas Tille (Laadunvalvontasivu)
External Resources:
- Kotisivu [doua.prabi.fr]
Samankaltaisia paketteja:
Multiplatform interface for sequence alignment and phylogeny
SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.
SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.
Muut pakettiin seaview liittyvät paketit
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- dep: libc6 (>= 2.34)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libfltk-images1.3t64
- Fast Light Toolkit - image loading support
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- dep: libfltk1.3t64 (>= 1.3.4)
- Fast Light Toolkit - main shared library
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- dep: libgcc-s1 (>= 3.0)
- GCC:n apukirjasto
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- dep: libstdc++6 (>= 13.1)
- GNU standardi C++ -kirjasto, versio 3
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- dep: zlib1g (>= 1:1.1.4)
- pakkauskirjaston ajonaikaistiedostot
Imuroi seaview
Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
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amd64 | 1:5.0.5-2+b1 | 386.3 kt | 1,016.0 kt | [tiedostoluettelo] |