Paketti: pyensembl (2.3.13-1)

[ Source: pyensembl  ]

installs data from the Ensembl genome database

The Ensembl genome database is an established reference for genomic sequences and their automated annotation. To have this data local has advantages for bulk analyses, e.g. for the mapping of reads from RNA-seq against the latest golden path - or a previous one to compare analyses.

This package provides a reproducible way to insatll this data and thus simplify the automation of respective workflows.

Muut pakettiin pyensembl liittyvät paketit

• dep: pylint

  Python 3 code static checker and UML diagram generator

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-datacache

  helpers for transparently downloading datasets

• dep: python3-gtfparse

  parser for gene transfer format (aka GFF2)

• dep: python3-memoized-property

  decorator to avoid redundant computation

• dep: python3-serializable

  base class with serialization methods

• dep: python3-typechecks

  express constraints on types

Imuroi pyensembl

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	35.8 kt	206.0 kt	[tiedostoluettelo]