Paketti: mhap (2.1.3+dfsg-3)

[ Source: mhap  ]

locality-sensitive hashing to detect long-read overlaps

The MinHash Alignment Process (MHAP--pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).

Muut pakettiin mhap liittyvät paketit

• dep: default-jre-headless

  Standard Java or Java compatible Runtime (headless)

• dep: jaligner

  Smith-Waterman algorithm with Gotoh's improvement

• dep: jarwrapper

  Run executable Java .jar files

• dep: libcommons-compress-java

  Java API for working with compression and archive formats

• dep: libfastutil-java

  Java API providing type-specific maps, sets, lists and queues

• dep: libguava-java (>= 19)

  Suite of Google common libraries for Java

• dep: libssw-java

  Java bindings for libssw

Imuroi mhap

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	156.5 kt	192.0 kt	[tiedostoluettelo]