Paketti: q2-demux (2024.5.0+dfsg-1)

[ Source: q2-demux  ]

QIIME 2 plugin for demultiplexing of sequence reads

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Muut pakettiin q2-demux liittyvät paketit

• dep: node-d3

  Data-Driven Documents to visualize data

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-ipywidgets

  Interactive widgets for the Jupyter notebook (Python 3)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-psutil

  module providing convenience functions for managing processes (Python3)

• dep: python3-seaborn

  statistical visualization library for Python3

• dep: python3-setuptools

  Python3 Distutils Enhancements

• dep: python3-skbio

  Python3 data structures, algorithms, educational resources for bioinformatic

• dep: python3-yaml

  YAML parser and emitter for Python3

• dep: q2-types (>= 2024.5)

  QIIME 2 plugin defining types for microbiome analysis

• dep: q2templates (>= 2024.5)

  Design template package for QIIME 2 Plugins

• dep: qiime (>= 2024.5)

  Quantitative Insights Into Microbial Ecology

Imuroi q2-demux

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	90.8 kt	436.0 kt	[tiedostoluettelo]