Paketti: libfreecontact-perl (0.08-9 ja muut)

[ Source: libfreecontact-perl  ]

fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

Tagit: Software Development: Perl Development, Kirjastot, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

Muut pakettiin libfreecontact-perl liittyvät paketit

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libfreecontact0t64 (>= 1.0.21)

  fast protein contact predictor library

• dep: libgcc-s1 (>= 3.0)

  GCC:n apukirjasto

• dep: perl (>= 5.40.0-6)

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• dep: perlapi-5.40.0

  näennäispaketti, jonka toteuttaa perl-base

Imuroi libfreecontact-perl

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
ppc64el	0.08-9+b5	61.9 kt	225.0 kt	[tiedostoluettelo]