Paketti: r-bioc-ucsc.utils (1.0.0+ds-2)

[ Source: r-bioc-ucsc.utils  ]

Low-level utilities to retrieve data from the UCSC Genome

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A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.

Muut pakettiin r-bioc-ucsc.utils liittyvät paketit

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.19

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-cran-dbi

  GNU R package providing a generic database interface

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmariadb

  Database Interface and 'MariaDB' Driver

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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