Paketti: r-bioc-tximport (1.32.0+dfsg-1)

[ Source: r-bioc-tximport  ]

transcript-level estimates for biological sequencing

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Muut pakettiin r-bioc-tximport liittyvät paketit

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.19

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• sug: r-bioc-deseq2 (>= 1.11.6)

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-rhdf5

  BioConductor HDF5 interface to R

• sug: r-bioc-tximportdata

  GNU R various transcript abundance quantifiers

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• sug: r-cran-readr (>= 0.2.2)

  GNU R package to read rectangular text data

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Imuroi r-bioc-tximport

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