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[ Source: libseqlib  ]

Paketti: libseqlib-dev (1.2.0+dfsg-11 ja muut)

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C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Tagit: Software Development: Kirjastot, Role: Development Library

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Arkkitehtuuri Versio Paketin koko Koko asennettuna Tiedostot
i386 1.2.0+dfsg-11+b2 230.5 kt1,017.0 kt [tiedostoluettelo]