Paketti: belvu (4.44.1+dfsg-7.1 ja muut)

[ Source: seqtools  ]

multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Tagit: Interface Toolkit: GTK

Muut pakettiin belvu liittyvät paketit

• dep: libatk1.0-0t64 (>= 1.12.4) [sparc64]

  ATK accessibility toolkit

• dep: libc6 (>= 2.38) [ei alpha, ia64, sh4]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2) [ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.16.2) [ei ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libfontconfig1 (>= 2.12.6) [sparc64]

  generic font configuration library - runtime

• dep: libfreetype6 (>= 2.2.1) [sparc64]

  FreeType 2 font engine, shared library files

• dep: libgbtools0t64 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0) [sparc64]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgdk-pixbuf-2.0-0 (>= 2.22.0) [sparc64]

  GDK Pixbuf library

• dep: libglib2.0-0t64 (>= 2.22.0)

  GLib library of C routines

• dep: libgtk2.0-0t64 (>= 2.12.0)

  GTK graphical user interface library - old version

• dep: libharfbuzz0b (>= 0.6.0) [sparc64]

  OpenType text shaping engine (shared library)

• dep: libjsoncpp26 (>= 1.9.6) [sparc64]

  library for reading and writing JSON for C++

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangocairo-1.0-0 (>= 1.14.0) [sparc64]

  Layout and rendering of internationalized text

• dep: libpangoft2-1.0-0 (>= 1.14.0) [sparc64]

  Layout and rendering of internationalized text

• dep: libstdc++6 (>= 4.1.1)

  GNU standardi C++ -kirjasto, versio 3

Imuroi belvu

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	4.44.1+dfsg-7.1+b1	1,029.1 kt	1,278.0 kt	[tiedostoluettelo]
amd64	4.44.1+dfsg-7.1+b2	1,030.1 kt	1,235.0 kt	[tiedostoluettelo]
arm64	4.44.1+dfsg-7.1+b2	1,020.4 kt	1,275.0 kt	[tiedostoluettelo]
armel	4.44.1+dfsg-7.1+b2	1,014.3 kt	1,190.0 kt	[tiedostoluettelo]
armhf	4.44.1+dfsg-7.1+b2	1,014.1 kt	1,138.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	4.44.1+dfsg-7.1+b1	1,025.7 kt	1,218.0 kt	[tiedostoluettelo]
i386	4.44.1+dfsg-7.1+b2	1,039.1 kt	1,262.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	4.44.1+dfsg-7.1	1,051.1 kt	1,457.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	4.44.1+dfsg-7.1+b1	1,027.7 kt	1,242.0 kt	[tiedostoluettelo]
mips64el	4.44.1+dfsg-7.1+b2	1,032.4 kt	1,360.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	4.44.1+dfsg-7.1+b1	1,037.7 kt	1,339.0 kt	[tiedostoluettelo]
ppc64el	4.44.1+dfsg-7.1+b2	1,037.3 kt	1,339.0 kt	[tiedostoluettelo]
riscv64	4.44.1+dfsg-7.1+b2	1,027.2 kt	1,191.0 kt	[tiedostoluettelo]
s390x	4.44.1+dfsg-7.1+b2	1,025.8 kt	1,247.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	4.44.1+dfsg-7.1+b1	1,042.2 kt	1,275.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	4.44.1+dfsg-7.1+b1	1,014.4 kt	1,991.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	4.44.1+dfsg-7.1+b1	1,030.5 kt	1,214.0 kt	[tiedostoluettelo]