Paketti: changeo (1.3.0-2)

[ Source: changeo  ]

Repertoire clonal assignment toolkit (Python 3)

Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included.

This package installs the library for Python 3.

Muut pakettiin changeo liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-airr

  Data Representation Standard library for antibody and TCR sequences

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-presto

  toolkit for processing B and T cell sequences (Python3 module)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• rec: python3-presto (>= 0.6.2)

  toolkit for processing B and T cell sequences (Python3 module)

Imuroi changeo

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	105.7 kt	701.0 kt	[tiedostoluettelo]