Paketti: ragout (2.3-5 ja muut)

[ Source: ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

Muut pakettiin ragout liittyvät paketit

• dep: libc6 (>= 2.38)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 14)

  GNU standardi C++ -kirjasto, versio 3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-six

  Python 2 and 3 compatibility library

• rec: sibelia

  comparative genomics tool

Imuroi ragout

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
arm64	2.3-5+b1	2,064.1 kt	9,664.0 kt	[tiedostoluettelo]