[ Source: r-bioc-genomicalignments ]
Paketti: r-bioc-genomicalignments (1.40.0-1)
Links for r-bioc-genomicalignments
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-genomicalignments:
- [r-bioc-genomicalignments_1.40.0-1.dsc]
- [r-bioc-genomicalignments_1.40.0.orig.tar.gz]
- [r-bioc-genomicalignments_1.40.0-1.debian.tar.xz]
Ylläpitäjät:
- Debian R Packages Maintainers (Laadunvalvontasivu)
- Andreas Tille (Laadunvalvontasivu)
- Charles Plessy (Laadunvalvontasivu)
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Muut pakettiin r-bioc-genomicalignments liittyvät paketit
|
|
|
|
-
- dep: libc6 (>= 2.4)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
-
- dep: r-api-4.0
- näennäispaketti, jonka toteuttaa r-base-core
-
- dep: r-api-bioc-3.19
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
-
- dep: r-bioc-biocgenerics (>= 0.50.0)
- generic functions for Bioconductor
-
- dep: r-bioc-biocparallel (>= 1.38.0)
- BioConductor facilities for parallel evaluation
-
- dep: r-bioc-biostrings (>= 2.72.1)
- GNU R string objects representing biological sequences
-
- dep: r-bioc-genomeinfodb (>= 1.40.1)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicranges (>= 1.56.1)
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges (>= 2.38.1)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rsamtools (>= 2.20.0)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- dep: r-bioc-s4vectors (>= 0.42.1)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-summarizedexperiment (>= 1.34.0)
- BioConductor assay container
-
- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-bsgenome (>= 1.72.0)
- BioConductor infrastructure for Biostrings-based genome data packages
-
- sug: r-bioc-deseq2 (>= 1.44.0)
- R package for RNA-Seq Differential Expression Analysis
-
- sug: r-bioc-edger (>= 4.2.0)
- Empirical analysis of digital gene expression data in R
-
- sug: r-bioc-genomicfeatures (>= 1.56.0)
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-bioc-rtracklayer (>= 1.64.0)
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-bioc-shortread (>= 1.62.0)
- GNU R classes and methods for high-throughput short-read sequencing data
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-runit
- GNU R package providing unit testing framework
Imuroi r-bioc-genomicalignments
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
---|---|---|---|
amd64 | 2,109.8 kt | 3,391.0 kt | [tiedostoluettelo] |