Paketti: tiddit (3.6.1+dfsg-1 ja muut) [debports]

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structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

Muut pakettiin tiddit liittyvät paketit

• dep: libc6.1 (>= 2.1.3)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-joblib

  tools to provide lightweight pipelining in Python

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

Imuroi tiddit

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	3.6.1+dfsg-1+b2	253.4 kt	1,429.0 kt	[tiedostoluettelo]