Paketti: srst2 (0.2.0-12) [debports]

[ Source:  ]

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Muut pakettiin srst2 liittyvät paketit

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-scipy

  scientific tools for Python 3

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: python3-rpy2

  Python3 interface to the GNU R language and environment (version 2)

Imuroi srst2

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	59.8 kt	265.0 kt	[tiedostoluettelo]