Paketti: r-bioc-txdbmaker (1.2.1+ds-1)

[ Source: r-bioc-txdbmaker  ]

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Tools for making TxDb objects from genomic annotations

A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files). These tools allow the user to download the genomic locations of transcripts, exons, and CDS, for a given assembly, and to import them in a TxDb object. TxDb objects are implemented in the GenomicFeatures package, together with flexible methods for extracting the desired features in convenient formats.

Muut pakettiin r-bioc-txdbmaker liittyvät paketit

• dep: r-api-4.0

  Paketti ei saatavilla

• dep: r-api-bioc-3.20

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocio

  standard input and output for Bioconductor packages

• dep: r-bioc-biomart (>= 2.59.1)

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• dep: r-bioc-genomeinfodb (>= 1.39.9)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-ucsc.utils

  Low-level utilities to retrieve data from the UCSC Genome Browser

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-rjson

  GNU R package for converting between R and JSON objects

• dep: r-cran-rsqlite (>= 2.0)

  Database Interface R driver for SQLite

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmariadb

  Database Interface and 'MariaDB' Driver

• sug: r-cran-runit

  GNU R package providing unit testing framework

Imuroi r-bioc-txdbmaker

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	722.7 kt	3,053.0 kt	[tiedostoluettelo]