Paketti: pbhoney (15.8.24+dfsg-3)

[ Source: pbsuite  ]

genomic structural variation discovery

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

PBHoney is part of the PBSuite.

Muut pakettiin pbhoney liittyvät paketit

• dep: blasr (>= 5.3)

  mapping single-molecule sequencing reads

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-h5py

  general-purpose Python interface to hdf5 (Python 2)

• dep: python-intervaltree-bio

  Interval tree convenience classes for genomic data -- Python 2 library

• dep: python-networkx

  tool to create, manipulate and study complex networks

• dep: python-numpy

  Numerical Python adds a fast array facility to the Python language

• dep: python-pbbanana (= 15.8.24+dfsg-3)

  additional utilities for the pbsuite

• dep: python-pbsuite-utils (= 15.8.24+dfsg-3)

  software for Pacific Biosciences sequencing data -- Python utilities

• dep: python-pysam (>= 0.8.0)

  interface for the SAM/BAM sequence alignment and mapping format (Python 2)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: pbdagcon

  sequence consensus using directed acyclic graphs

Imuroi pbhoney

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	1,280.3 kt	2,356.0 kt	[tiedostoluettelo]