Paketti: stacks (2.2+dfsg-1)

[ Source: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Muut pakettiin stacks liittyvät paketit

• dep: libc6 (>= 2.17)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc1 (>= 1:3.5)

  GCC:n apukirjasto

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libhts2 (>= 1.0)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  pakkauskirjaston ajonaikaistiedostot

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

Imuroi stacks

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
armhf	772.8 kt	2,869.0 kt	[tiedostoluettelo]