Paketti: nanook (1.33+dfsg-1)

[ Source: nanook  ]

pre- and post-alignment analysis of nanopore sequencing data

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles.

NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.

Muut pakettiin nanook liittyvät paketit

• dep: default-jre-headless

  Standard Java or Java compatible Runtime (headless)

• dep: hdf5-tools

  Hierarchical Data Format 5 (HDF5) - Runtime tools

• dep: last-align

  genome-scale comparison of biological sequences

• dep: libcommons-io-java

  Common useful IO related classes

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra

  GNU R package with extensions for the grid package

• dep: r-cran-reshape

  Flexibly reshape data

• dep: r-cran-scales

  Scale functions for visualization

• dep: texlive-latex-base

  TeX Live: LaTeX fundamental packages

• rec: blasr

  mapping single-molecule sequencing reads

• rec: bwa

  Burrows-Wheeler Aligner

• sug: default-jre

  Standard Java or Java compatible Runtime

Imuroi nanook

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	187.5 kt	283.0 kt	[tiedostoluettelo]