Paketti: arden (1.0-4)

[ Source: arden  ]

specificity control for read alignments using an artificial reference

ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.

Muut pakettiin arden liittyvät paketit

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-htseq

  Python high-throughput genome sequencing read analysis utilities
  myös näennäispaketti, jonka toteuttaa python3-htseq

• dep: python-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python-numpy

  Numerical Python adds a fast array facility to the Python language

• dep: python-scipy

  scientific tools for Python

Imuroi arden

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	86.7 kt	1,155.0 kt	[tiedostoluettelo]