Paketti: sprai (0.9.9.23+dfsg-2)

[ Source: sprai  ]

single-pass sequencing read accuracy improver

Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Muut pakettiin sprai liittyvät paketit

• dep: libc6 (>= 2.7)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: ncbi-blast+ (>= 2.2.27)

  next generation suite of BLAST sequence search tools

• dep: perl

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• dep: time

  GNU time ohjelma suorittimen resurssien käytön seurantaan

• sug: make

  utility for directing compilation

• sug: pbalign

  map Pacific Biosciences reads to reference DNA sequences

• sug: pbgenomicconsensus

  Pacific Biosciences variant and consensus caller

• sug: pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files

Imuroi sprai

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	1,480.4 kt	1,715.0 kt	[tiedostoluettelo]