Paketti: belvu (4.44.1+dfsg-3)

[ Source: seqtools  ]

multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Tagit: Interface Toolkit: GTK

Muut pakettiin belvu liittyvät paketit

• dep: libatk1.0-0 (>= 1.12.4)

  ATK accessibility toolkit

• dep: libc6 (>= 2.14)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libfontconfig1 (>= 2.12.6)

  generic font configuration library - runtime

• dep: libfreetype6 (>= 2.2.1)

  FreeType 2 font engine, shared library files

• dep: libgbtools0

  library for visualising sequence alignments

• dep: libgcc1 (>= 1:3.0)

  GCC:n apukirjasto

• dep: libgdk-pixbuf2.0-0 (>= 2.22.0)

  GDK Pixbuf library

• dep: libglib2.0-0 (>= 2.22.0)

  GLib library of C routines

• dep: libgtk2.0-0 (>= 2.12.0)

  GTK+ graphical user interface library

• dep: libjsoncpp1 (>= 1.7.4)

  library for reading and writing JSON for C++

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangoft2-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libstdc++6 (>= 4.1.1)

  GNU standardi C++ -kirjasto, versio 3

Imuroi belvu

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	197.1 kt	396.0 kt	[tiedostoluettelo]