Paketti: quorum (1.1.1-4)

[ Source: quorum  ]

QUality Optimized Reads of genomic sequences

QuorUM enables to obtain trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. QuorUM provides best performance compared to other published error correctors in several metrics. QuorUM is efficiently implemented making use of current multi- core computing architectures and it is suitable for large data sets (1 billion bases checked and corrected per day per core). The third-party assembler (SOAPdenovo) benefits significantly from using QuorUM error- corrected reads. QuorUM error corrected reads result in a factor of 1.1 to 4 improvement in N50 contig size compared to using the original reads with SOAPdenovo for the data sets investigated.

Muut pakettiin quorum liittyvät paketit

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC:n apukirjasto

• dep: libjellyfish-2.0-2 (>= 2.3.0)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 9)

  GNU standardi C++ -kirjasto, versio 3

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Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	111.8 kt	393.0 kt	[tiedostoluettelo]
arm64	105.6 kt	365.0 kt	[tiedostoluettelo]
mips64el	112.5 kt	436.0 kt	[tiedostoluettelo]
ppc64el	114.4 kt	549.0 kt	[tiedostoluettelo]