Paketti: q2-quality-control (2020.11.1-3)

[ Source: q2-quality-control  ]

QIIME 2 plugin for quality assurance of feature and sequence data

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Muut pakettiin q2-quality-control liittyvät paketit

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biom-format

  Biological Observation Matrix (BIOM) format (Python 3)

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-seaborn

  statistical visualization library for Python3

• dep: q2-taxa

  QIIME 2 plugin for working with feature taxonomy annotations

• dep: q2templates

  Design template package for QIIME 2 Plugins

• dep: qiime

  Quantitative Insights Into Microbial Ecology

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: vsearch

  tool for processing metagenomic sequences

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