Paketti: python3-pbcommand (2.1.1+git20201023.cc0ed3d-1)

[ Source: python-pbcommand  ]

common command-line interface for Pacific Biosciences analysis modules

To integrate with the pbsmrtpipe workflow engine, one must to be able to generate a Tool Contract and to be able to run from a Resolved Tool Contract. A Tool Contract contains the metadata of the exe, such as the file types of inputs, outputs and options. There are two principal use cases, first wrapping/calling Python functions that have been defined in external Python 3 packages, or scripts. Second, creating a CLI tool that supports emitting tool contracts, running resolved tool contracts and complete argparse-style CLI.

Muut pakettiin python3-pbcommand liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-avro

  Apache Avro serialization system (Python 3 library)

• dep: python3-iso8601

  Python module to parse ISO 8601 dates - Python 3.x

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-requests

  elegant and simple HTTP library for Python3, built for human beings

• dep: python3-tz

  Python3 version of the Olson timezone database

• rec: python3-pbcore

  Python 3 library for processing PacBio data files

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