Paketti: r-cran-spp (1.16.0-2)

[ Source: r-cran-spp  ]

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

Muut pakettiin r-cran-spp liittyvät paketit

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-base-core (>= 4.0.2-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-cran-bh (>= 1.66)

  (Virtual) GNU R package to provide BH

• dep: r-cran-catools

  GNU R package providing various utility functions

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

Imuroi r-cran-spp

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
i386	320.8 kt	459.0 kt	[tiedostoluettelo]