Paketti: libjellyfish-perl (2.3.0-10)

[ Source: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Tagit: Software Development: Perl Development, Kirjastot, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

Muut pakettiin libjellyfish-perl liittyvät paketit

• dep: libc6 (>= 2.4)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC:n apukirjasto

• dep: perl

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• dep: perlapi-5.32.1

  näennäispaketti, jonka toteuttaa perl-base

Imuroi libjellyfish-perl

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
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