Paketti: bio-eagle (2.4.1-3 ja muut)

[ Source: bio-eagle  ]

Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: Analysing

Muut pakettiin bio-eagle liittyvät paketit

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams -kirjasto

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libopenblas0

  Optimized BLAS (linear algebra) library (meta)

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• rec: med-config (>= 2.1)

  Debian Med general config package

• sug: bio-eagle-examples

  Examples for bio-eagle

Imuroi bio-eagle

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.4.1-3+b1	218.8 kt	619.0 kt	[tiedostoluettelo]
i386	2.4.1-3+b1	244.9 kt	674.0 kt	[tiedostoluettelo]