Paketti: python3-pairtools (0.3.0-2 ja muut)

[ Source: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Muut pakettiin python3-pairtools liittyvät paketit

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.4)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10)

  dep: python3 (>= 3.9~)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-nose

  test discovery and running for Python3 unittest

• dep: python3-numpy

  Fast array facility to the Python 3 language

Imuroi python3-pairtools

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
armhf	0.3.0-2+b2	109.4 kt	342.0 kt	[tiedostoluettelo]