Paketti: mapdamage (2.2.1+dfsg-1)

[ Source: mapdamage  ]

tracking and quantifying damage patterns in ancient DNA sequences

MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.

Muut pakettiin mapdamage liittyvät paketit

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  tai libblas-dev

  Basic Linear Algebra Subroutines 3, static library

  tai libatlas-base-dev

  Automatically Tuned Linear Algebra Software, generic static

  tai libblas.so

  näennäispaketti, jonka toteuttaa libatlas-base-dev, libblas-dev, libblis-openmp-dev, libblis-pthread-dev, libblis-serial-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  tai liblapack-dev

  Library of linear algebra routines 3 - static version

  tai libatlas-base-dev

  Automatically Tuned Linear Algebra Software, generic static

  tai liblapack.so

  näennäispaketti, jonka toteuttaa libatlas-base-dev, liblapack-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-gam

  Generalized Additive Models for R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-inline

  GNU R package to inline C, C++, Fortran functions from R

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppgsl

  GNU R package for integration with the GNU GSL

• dep: seqtk

  Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Imuroi mapdamage

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	41.5 kt	191.0 kt	[tiedostoluettelo]