Paketti: cnvkit (0.9.8-1)

[ Source: cnvkit  ]

Copy number variant detection from targeted DNA sequencing

A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.

Muut pakettiin cnvkit liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pomegranate

  Fast, flexible and easy to use probabilistic modelling

• dep: python3-pyfaidx

  efficient random access to fasta subsequences for Python 3

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-reportlab

  ReportLab library to create PDF documents using Python3

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-sklearn

  Python modules for machine learning and data mining - Python 3

• dep: r-bioc-dnacopy

  R package: DNA copy number data analysis

Imuroi cnvkit

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	15,065.2 kt	69,059.0 kt	[tiedostoluettelo]