Paketin bali-phy tiedostoluettelo jakelussa bullseye arkkitehtuurilla amd64
/usr/bin/alignment-cat /usr/bin/alignment-chop-internal /usr/bin/alignment-consensus /usr/bin/alignment-distances /usr/bin/alignment-draw /usr/bin/alignment-find /usr/bin/alignment-gild /usr/bin/alignment-indices /usr/bin/alignment-info /usr/bin/alignment-max /usr/bin/alignment-thin /usr/bin/alignment-translate /usr/bin/alignments-diff /usr/bin/bali-phy /usr/bin/bali-phy-pkg /usr/bin/bali-subsample /usr/bin/bp-analyze /usr/bin/cut-range /usr/bin/draw-tree /usr/bin/extract-ancestors /usr/bin/mctree-mean-lengths /usr/bin/model_P /usr/bin/pickout /usr/bin/statreport /usr/bin/stats-select /usr/bin/summarize-ancestors /usr/bin/tree-mean-lengths /usr/bin/tree-tool /usr/bin/trees-bootstrap /usr/bin/trees-consensus /usr/bin/trees-distances /usr/bin/trees-to-SRQ /usr/lib/bali-phy/Alignment.so /usr/lib/bali-phy/Alphabet.so /usr/lib/bali-phy/Array.so /usr/lib/bali-phy/Bits.so /usr/lib/bali-phy/Char.so /usr/lib/bali-phy/Data.so /usr/lib/bali-phy/Distribution.so /usr/lib/bali-phy/Environment.so /usr/lib/bali-phy/Foreign.so /usr/lib/bali-phy/MCMC.so /usr/lib/bali-phy/Modifiables.so /usr/lib/bali-phy/Pair.so /usr/lib/bali-phy/PopGen.so /usr/lib/bali-phy/Prelude.so /usr/lib/bali-phy/Range.so /usr/lib/bali-phy/Real.so /usr/lib/bali-phy/SMC.so /usr/lib/bali-phy/SModel.so /usr/lib/bali-phy/Text.so /usr/lib/bali-phy/Vector.so /usr/lib/bali-phy/bindings/distributions/bernoulli.json /usr/lib/bali-phy/bindings/distributions/beta.json /usr/lib/bali-phy/bindings/distributions/binomial.json /usr/lib/bali-phy/bindings/distributions/cauchy.json /usr/lib/bali-phy/bindings/distributions/exponential.json /usr/lib/bali-phy/bindings/distributions/gamma.json /usr/lib/bali-phy/bindings/distributions/geometric.json /usr/lib/bali-phy/bindings/distributions/iid.json /usr/lib/bali-phy/bindings/distributions/laplace.json /usr/lib/bali-phy/bindings/distributions/log_gamma.json /usr/lib/bali-phy/bindings/distributions/log_laplace.json /usr/lib/bali-phy/bindings/distributions/log_normal.json /usr/lib/bali-phy/bindings/distributions/normal.json /usr/lib/bali-phy/bindings/distributions/poisson.json /usr/lib/bali-phy/bindings/distributions/shifted_exponential.json /usr/lib/bali-phy/bindings/distributions/shifted_gamma.json /usr/lib/bali-phy/bindings/distributions/symmetric_dirichlet.json /usr/lib/bali-phy/bindings/distributions/symmetric_dirichlet_on.json /usr/lib/bali-phy/bindings/distributions/uniform.json /usr/lib/bali-phy/bindings/distributions/uniform_int.json /usr/lib/bali-phy/bindings/functions/aa.json /usr/lib/bali-phy/bindings/functions/add.json /usr/lib/bali-phy/bindings/functions/codons.json /usr/lib/bali-phy/bindings/functions/constructors/Cons.json /usr/lib/bali-phy/bindings/functions/constructors/Nil.json /usr/lib/bali-phy/bindings/functions/cos.json /usr/lib/bali-phy/bindings/functions/div.json /usr/lib/bali-phy/bindings/functions/dna.json /usr/lib/bali-phy/bindings/functions/exp.json /usr/lib/bali-phy/bindings/functions/getAminoAcids.json /usr/lib/bali-phy/bindings/functions/getNucleotides.json /usr/lib/bali-phy/bindings/functions/intToDouble.json /usr/lib/bali-phy/bindings/functions/length.json /usr/lib/bali-phy/bindings/functions/letter_pairs.json /usr/lib/bali-phy/bindings/functions/letters.json /usr/lib/bali-phy/bindings/functions/log.json /usr/lib/bali-phy/bindings/functions/map.json /usr/lib/bali-phy/bindings/functions/mul.json /usr/lib/bali-phy/bindings/functions/num_branches.json /usr/lib/bali-phy/bindings/functions/quantile.json /usr/lib/bali-phy/bindings/functions/replicate.json /usr/lib/bali-phy/bindings/functions/rna.json /usr/lib/bali-phy/bindings/functions/sin.json /usr/lib/bali-phy/bindings/functions/sqrt.json /usr/lib/bali-phy/bindings/functions/standard_code.json /usr/lib/bali-phy/bindings/functions/sub.json /usr/lib/bali-phy/bindings/functions/take.json /usr/lib/bali-phy/bindings/functions/tan.json /usr/lib/bali-phy/bindings/functions/uniform_discretize.json /usr/lib/bali-phy/bindings/functions/unit_mixture.json /usr/lib/bali-phy/bindings/functions/zip.json /usr/lib/bali-phy/bindings/functions/zipWith.json /usr/lib/bali-phy/bindings/models/Covarion/galtier01.json /usr/lib/bali-phy/bindings/models/Covarion/huelsenbeck02.json /usr/lib/bali-phy/bindings/models/Covarion/ts98.json /usr/lib/bali-phy/bindings/models/Covarion/wang07.json /usr/lib/bali-phy/bindings/models/Frequencies/uniform.json /usr/lib/bali-phy/bindings/models/Rates/free.json /usr/lib/bali-phy/bindings/models/Rates/gamma.json /usr/lib/bali-phy/bindings/models/Rates/log_normal.json /usr/lib/bali-phy/bindings/models/branch_site.json /usr/lib/bali-phy/bindings/models/dNdS.json /usr/lib/bali-phy/bindings/models/density.json /usr/lib/bali-phy/bindings/models/empirical.json /usr/lib/bali-phy/bindings/models/equ.json /usr/lib/bali-phy/bindings/models/f.json /usr/lib/bali-phy/bindings/models/f1x4.json /usr/lib/bali-phy/bindings/models/f3x4.json /usr/lib/bali-phy/bindings/models/f61.json /usr/lib/bali-phy/bindings/models/f81.json /usr/lib/bali-phy/bindings/models/fMutSel.json /usr/lib/bali-phy/bindings/models/fMutSel0.json /usr/lib/bali-phy/bindings/models/fe.json /usr/lib/bali-phy/bindings/models/get_q.json /usr/lib/bali-phy/bindings/models/gtr.json /usr/lib/bali-phy/bindings/models/gtr_sym.json /usr/lib/bali-phy/bindings/models/gwF.json /usr/lib/bali-phy/bindings/models/gy94.json /usr/lib/bali-phy/bindings/models/gy94_ext.json /usr/lib/bali-phy/bindings/models/hky85.json /usr/lib/bali-phy/bindings/models/hky85_sym.json /usr/lib/bali-phy/bindings/models/inv.json /usr/lib/bali-phy/bindings/models/jc69.json /usr/lib/bali-phy/bindings/models/jtt.json /usr/lib/bali-phy/bindings/models/k80.json /usr/lib/bali-phy/bindings/models/lg08.json /usr/lib/bali-phy/bindings/models/lg08_freq.json /usr/lib/bali-phy/bindings/models/m1a.json /usr/lib/bali-phy/bindings/models/m2a.json /usr/lib/bali-phy/bindings/models/m2a_test.json /usr/lib/bali-phy/bindings/models/m3.json /usr/lib/bali-phy/bindings/models/m3_test.json /usr/lib/bali-phy/bindings/models/m7.json /usr/lib/bali-phy/bindings/models/m8.json /usr/lib/bali-phy/bindings/models/m8a.json /usr/lib/bali-phy/bindings/models/m8a_test.json /usr/lib/bali-phy/bindings/models/markov_modulate_mixture.json /usr/lib/bali-phy/bindings/models/mg94.json /usr/lib/bali-phy/bindings/models/mg94_ext.json /usr/lib/bali-phy/bindings/models/mg94k.json /usr/lib/bali-phy/bindings/models/mixture.json /usr/lib/bali-phy/bindings/models/multiMixtureModel.json /usr/lib/bali-phy/bindings/models/multi_rate.json /usr/lib/bali-phy/bindings/models/mut_sel.json /usr/lib/bali-phy/bindings/models/mut_sel_aa.json /usr/lib/bali-phy/bindings/models/pam.json /usr/lib/bali-phy/bindings/models/parameter_mixture.json /usr/lib/bali-phy/bindings/models/rna_16a.json /usr/lib/bali-phy/bindings/models/rs05.json /usr/lib/bali-phy/bindings/models/rs07.json /usr/lib/bali-phy/bindings/models/rs07_relaxed_rates.json /usr/lib/bali-phy/bindings/models/sample.json /usr/lib/bali-phy/bindings/models/scaled_mixture.json /usr/lib/bali-phy/bindings/models/tn93.json /usr/lib/bali-phy/bindings/models/tn93_sym.json /usr/lib/bali-phy/bindings/models/wag.json /usr/lib/bali-phy/bindings/models/wag_freq.json /usr/lib/bali-phy/bindings/models/x2.json /usr/lib/bali-phy/bindings/models/x2_sym.json /usr/lib/bali-phy/bindings/models/x2x2.json /usr/lib/bali-phy/bindings/models/x3.json /usr/lib/bali-phy/bindings/models/x3_sym.json /usr/lib/bali-phy/bindings/models/x3x3.json /usr/lib/bali-phy/haskell/BAliPhy/ATModel.hs /usr/lib/bali-phy/haskell/BAliPhy/ATModel/DataPartition.hs /usr/lib/bali-phy/haskell/Bio/Alignment.hs /usr/lib/bali-phy/haskell/Bio/Alignment/Matrix.hs /usr/lib/bali-phy/haskell/Bio/Alignment/Pairwise.hs /usr/lib/bali-phy/haskell/Bio/Alphabet.hs /usr/lib/bali-phy/haskell/Bio/Sequence.hs /usr/lib/bali-phy/haskell/Compiler/Base.hs /usr/lib/bali-phy/haskell/Compiler/Enum.hs /usr/lib/bali-phy/haskell/Compiler/IO.hs /usr/lib/bali-phy/haskell/Compiler/Num.hs /usr/lib/bali-phy/haskell/Compiler/Real.hs /usr/lib/bali-phy/haskell/Compiler/ST.hs /usr/lib/bali-phy/haskell/Control/DeepSeq.hs /usr/lib/bali-phy/haskell/Control/Monad.hs /usr/lib/bali-phy/haskell/Data/Array.hs /usr/lib/bali-phy/haskell/Data/BitVector.hs /usr/lib/bali-phy/haskell/Data/Bool.hs /usr/lib/bali-phy/haskell/Data/Char.hs /usr/lib/bali-phy/haskell/Data/Either.hs /usr/lib/bali-phy/haskell/Data/Eq.hs /usr/lib/bali-phy/haskell/Data/Function.hs /usr/lib/bali-phy/haskell/Data/Ix.hs /usr/lib/bali-phy/haskell/Data/JSON.hs /usr/lib/bali-phy/haskell/Data/List.hs /usr/lib/bali-phy/haskell/Data/Map.hs /usr/lib/bali-phy/haskell/Data/Matrix.hs /usr/lib/bali-phy/haskell/Data/Maybe.hs /usr/lib/bali-phy/haskell/Data/Ord.hs /usr/lib/bali-phy/haskell/Data/ReadFile.hs /usr/lib/bali-phy/haskell/Data/Set.hs /usr/lib/bali-phy/haskell/Data/Text.hs /usr/lib/bali-phy/haskell/Data/Tuple.hs /usr/lib/bali-phy/haskell/Foreign/Introspection.hs /usr/lib/bali-phy/haskell/Foreign/Pair.hs /usr/lib/bali-phy/haskell/Foreign/String.hs /usr/lib/bali-phy/haskell/Foreign/Vector.hs /usr/lib/bali-phy/haskell/IModel.hs /usr/lib/bali-phy/haskell/MCMC.hs /usr/lib/bali-phy/haskell/Parameters.hs /usr/lib/bali-phy/haskell/Parse.hs /usr/lib/bali-phy/haskell/PopGen.hs /usr/lib/bali-phy/haskell/Prelude.hs /usr/lib/bali-phy/haskell/Probability.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Bernoulli.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Beta.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Binomial.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Categorical.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Cauchy.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Dirichlet.hs /usr/lib/bali-phy/haskell/Probability/Distribution/DirichletProcess.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Discrete.hs /usr/lib/bali-phy/haskell/Probability/Distribution/ExpTransform.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Exponential.hs /usr/lib/bali-phy/haskell/Probability/Distribution/FakeDist.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Gamma.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Geometric.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Laplace.hs /usr/lib/bali-phy/haskell/Probability/Distribution/List.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Mixture.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Normal.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Poisson.hs /usr/lib/bali-phy/haskell/Probability/Distribution/RandomAlignment.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Tree.hs /usr/lib/bali-phy/haskell/Probability/Distribution/Uniform.hs /usr/lib/bali-phy/haskell/Probability/Random.hs /usr/lib/bali-phy/haskell/Range.hs /usr/lib/bali-phy/haskell/SMC.hs /usr/lib/bali-phy/haskell/SModel.hs /usr/lib/bali-phy/haskell/SModel/Codons.hs /usr/lib/bali-phy/haskell/SModel/Doublets.hs /usr/lib/bali-phy/haskell/SModel/Frequency.hs /usr/lib/bali-phy/haskell/SModel/Likelihood.hs /usr/lib/bali-phy/haskell/SModel/Nucleotides.hs /usr/lib/bali-phy/haskell/SModel/ReversibleMarkov.hs /usr/lib/bali-phy/haskell/System/Environment.hs /usr/lib/bali-phy/haskell/Tree.hs /usr/lib/bali-phy/haskell/Tree/Newick.hs /usr/lib/bali-phy/help/alphabets.txt /usr/lib/bali-phy/help/alphabets/Codons.txt /usr/lib/bali-phy/help/alphabets/Doublets.txt /usr/lib/bali-phy/help/alphabets/Triplets.txt /usr/lib/bali-phy/help/alphabets/genetic-code.txt /usr/lib/bali-phy/help/commands/Rao-Blackwellize.txt /usr/lib/bali-phy/help/commands/align.txt /usr/lib/bali-phy/help/commands/alphabet.txt /usr/lib/bali-phy/help/commands/branch-lengths.txt /usr/lib/bali-phy/help/commands/config.txt /usr/lib/bali-phy/help/commands/disable.txt /usr/lib/bali-phy/help/commands/enable.txt /usr/lib/bali-phy/help/commands/imodel.txt /usr/lib/bali-phy/help/commands/iterations.txt /usr/lib/bali-phy/help/commands/link.txt /usr/lib/bali-phy/help/commands/model.txt /usr/lib/bali-phy/help/commands/name.txt /usr/lib/bali-phy/help/commands/package-path.txt /usr/lib/bali-phy/help/commands/pre-burnin.txt /usr/lib/bali-phy/help/commands/print.txt /usr/lib/bali-phy/help/commands/scale.txt /usr/lib/bali-phy/help/commands/seed.txt /usr/lib/bali-phy/help/commands/set.txt /usr/lib/bali-phy/help/commands/smodel.txt /usr/lib/bali-phy/help/commands/subsample.txt /usr/lib/bali-phy/help/commands/test.txt /usr/lib/bali-phy/help/commands/tree.txt /usr/lib/bali-phy/help/commands/unalign.txt /usr/lib/bali-phy/help/commands/verbose.txt /usr/lib/bali-phy/help/commands/version.txt /usr/lib/bali-phy/help/parameters.txt /usr/lib/bali-phy/help/parameters/priors.txt /usr/lib/bali-phy/libexec/compare-runs.R /usr/lib/bali-phy/libexec/compare-runs2.R /usr/lib/bali-phy/libexec/tree-plot-3D.R /usr/lib/bali-phy/libexec/tree-plot.R /usr/share/doc/bali-phy/README.test /usr/share/doc/bali-phy/changelog.Debian.gz /usr/share/doc/bali-phy/copyright /usr/share/doc/bali-phy/examples/models/Airline.hs /usr/share/doc/bali-phy/examples/models/Coalmine.hs /usr/share/doc/bali-phy/examples/models/Demo1.hs /usr/share/doc/bali-phy/examples/models/Demo2.hs /usr/share/doc/bali-phy/examples/models/Demo3.hs /usr/share/doc/bali-phy/examples/models/Demo4.hs /usr/share/doc/bali-phy/examples/models/Demo5.hs /usr/share/doc/bali-phy/examples/models/Demo6.hs /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-clustalw.dnd /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-dialign2-2.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-fsa.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-fsa.ph /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-poy.command /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-poy.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-poy.tree /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-poy.trees /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-probcons-RNA.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-t-coffee.dnd /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-t-coffee.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-tcoffee.dnd /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25-tcoffee.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/25.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-clustalw.dnd /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-dialign2-2.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-fsa.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-fsa.ph /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-probcons-RNA.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-t-coffee.dnd /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48-t-coffee.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/48.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/5d-clustalw.dnd /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/5d-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/5d-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/5S-rRNA/5d.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph /usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF/hisA.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF/hisF.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr/trp.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr/tyr.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/12d-clustalw.dnd /usr/share/doc/bali-phy/examples/sequences/EF-Tu/12d-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/12d-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/12d.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/25-mafft.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/48b-clustalw.dnd /usr/share/doc/bali-phy/examples/sequences/EF-Tu/48b-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/48b.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/5d-clustalw.dnd /usr/share/doc/bali-phy/examples/sequences/EF-Tu/5d-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/5d-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/EF-Tu/5d.fasta /usr/share/doc/bali-phy/examples/sequences/Enolase/enolase-38-trimmed.fasta /usr/share/doc/bali-phy/examples/sequences/Enolase/enolase-38.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/globins.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/v-src.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/10-globins-Lunter.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/10-globins.xml /usr/share/doc/bali-phy/examples/sequences/Globins/bglobin.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/few-clustalw.dnd /usr/share/doc/bali-phy/examples/sequences/Globins/few-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/few-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/few.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/globins.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/many-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/many.fasta /usr/share/doc/bali-phy/examples/sequences/Globins/some.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/HIVSIV.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005/env-clustal.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005/env-common.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005/env.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005/pol-clustal.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005/pol-common.fasta /usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005/pol.fasta /usr/share/doc/bali-phy/examples/sequences/ITS/5.8S.fasta /usr/share/doc/bali-phy/examples/sequences/ITS/ITS1-trimmed.fasta /usr/share/doc/bali-phy/examples/sequences/ITS/ITS2-trimmed.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/Starch_binding_domain.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/annexin.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/haloperoxidase.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/lectin.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/legume_lectin.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/lysozyme.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/papain.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/parvalbumin-like.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/rr_receiver.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/subtilase.fasta /usr/share/doc/bali-phy/examples/sequences/Miklos-2008/xylose_isomerase.fasta /usr/share/doc/bali-phy/examples/sequences/ferns/README.txt /usr/share/doc/bali-phy/examples/sequences/ferns/cleaned.fasta /usr/share/doc/bali-phy/examples/sequences/ferns/config.txt /usr/share/doc/bali-phy/examples/sequences/ferns/config2.txt /usr/share/doc/bali-phy/examples/sequences/ferns/orig.fasta /usr/share/doc/bali-phy/examples/sequences/ferns/orig.nex /usr/share/doc/bali-phy/examples/sequences/lrRNA/NOTES.txt /usr/share/doc/bali-phy/examples/sequences/lrRNA/keep.pl /usr/share/doc/bali-phy/examples/sequences/lrRNA/mollusc.fasta /usr/share/doc/bali-phy/examples/sequences/lrRNA/mollusc.gb /usr/share/doc/bali-phy/examples/sequences/lrRNA/mollusc.rna.fasta /usr/share/doc/bali-phy/examples/sequences/lrRNA/mollusc12.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/30-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/30-clustalw.ph /usr/share/doc/bali-phy/examples/sequences/microbotryum/30-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/30-muscle.ph /usr/share/doc/bali-phy/examples/sequences/microbotryum/30.aln /usr/share/doc/bali-phy/examples/sequences/microbotryum/30.dnd /usr/share/doc/bali-phy/examples/sequences/microbotryum/30.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/30.ph /usr/share/doc/bali-phy/examples/sequences/microbotryum/37-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/37-clustalw.ph /usr/share/doc/bali-phy/examples/sequences/microbotryum/37-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/37-muscle.ph /usr/share/doc/bali-phy/examples/sequences/microbotryum/37.dnd /usr/share/doc/bali-phy/examples/sequences/microbotryum/37.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/76-clustalw.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/76-clustalw.ph /usr/share/doc/bali-phy/examples/sequences/microbotryum/76-muscle.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/76-muscle.ph /usr/share/doc/bali-phy/examples/sequences/microbotryum/76.dnd /usr/share/doc/bali-phy/examples/sequences/microbotryum/76.fasta /usr/share/doc/bali-phy/examples/sequences/microbotryum/additional.accessions /usr/share/doc/bali-phy/examples/sequences/microbotryum/other.accessions /usr/share/doc/bali-phy/examples/sequences/microbotryum/paper.txt /usr/share/doc/bali-phy/examples/sequences/microbotryum/table1.accessions /usr/share/doc/bali-phy/run-unit-test /usr/share/lintian/overrides/bali-phy /usr/share/man/man1/alignment-cat.1.gz /usr/share/man/man1/alignment-chop-internal.1.gz /usr/share/man/man1/alignment-consensus.1.gz /usr/share/man/man1/alignment-distances.1.gz /usr/share/man/man1/alignment-draw.1.gz /usr/share/man/man1/alignment-find.1.gz /usr/share/man/man1/alignment-gild.1.gz /usr/share/man/man1/alignment-indices.1.gz /usr/share/man/man1/alignment-info.1.gz /usr/share/man/man1/alignment-max.1.gz /usr/share/man/man1/alignment-thin.1.gz /usr/share/man/man1/alignment-translate.1.gz /usr/share/man/man1/alignments-diff.1.gz /usr/share/man/man1/bali-phy-pkg.1.gz /usr/share/man/man1/bali-phy.1.gz /usr/share/man/man1/bali-subsample.1.gz /usr/share/man/man1/bp-analyze.1.gz /usr/share/man/man1/cut-range.1.gz /usr/share/man/man1/draw-tree.1.gz /usr/share/man/man1/extract-ancestors.1.gz /usr/share/man/man1/mctree-mean-lengths.1.gz /usr/share/man/man1/model_P.1.gz /usr/share/man/man1/pickout.1.gz /usr/share/man/man1/statreport.1.gz /usr/share/man/man1/stats-select.1.gz /usr/share/man/man1/summarize-ancestors.1.gz /usr/share/man/man1/tree-mean-lengths.1.gz /usr/share/man/man1/tree-tool.1.gz /usr/share/man/man1/trees-bootstrap.1.gz /usr/share/man/man1/trees-consensus.1.gz /usr/share/man/man1/trees-distances.1.gz /usr/share/man/man1/trees-to-SRQ.1.gz