Paketti: megan-ce (6.21.1+dfsg-2)

[ Source: megan-ce  ]

interactive tool to explore and analyse microbiome sequencing data

MEGAN Community Edition is a shotgun sequencer to analyze microbiome samples. It is a rewrite and extension of the widely-used microbiome analysis tool MEGAN so as to facilitate the interactive analysis of the taxonomic and functional content of very large microbiome datasets. Other new features include a functional classifier called InterPro2GO, gene-centric read assembly, principal coordinate analysis of taxonomy and function, and support for metadata. By integrating MEGAN CE with the high-throughput DNA-to-protein alignment tool DIAMOND a powerful and complete pipeline for the analysis of metagenome shotgun sequences can be provided.

Muut pakettiin megan-ce liittyvät paketit

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libcolt-free-java

  scalable scientific and technical computing in Java

• dep: libcommons-math3-java

  Java lightweight mathematics and statistics components

• dep: libgoogle-gson-java

  Converts Java objects into their JSON representation

• dep: libjama-java

  Basic linear algebra library for Java

• dep: libjbcrypt-java

  Java implementation of OpenBSD's Blowfish hashing

• dep: libjloda-java

  Java library of data structures and algorithms for bioinformatics

• dep: libopenjfx-java

  JavaFX/OpenJFX - Rich client application platform for Java (Java libraries)

• dep: libsis-jhdf5-java

  easy-to-use HDF library for Java

• dep: libxerial-sqlite-jdbc-java

  Xerial's SQLite JDBC Driver

Imuroi megan-ce

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	36,188.2 kt	37,717.0 kt	[tiedostoluettelo]