Paketti: libsnpeff-java (5.1+d+dfsg-3)

[ Source: snpeff  ]

genetic variant annotation and effect prediction toolbox - lib

SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).

The inputs are predicted variants (SNPs, insertions, deletions and MNPs). The input file is usually obtained as a result of a sequencing experiment, and it is usually in variant call format (VCF).

SnpEff analyzes the input variants. It annotates the variants and calculates the effects they produce on known genes (e.g. amino acid changes).

This package contains the library.

Muut pakettiin libsnpeff-java liittyvät paketit

• dep: junit5

  JUnit regression test framework for Java

• dep: libapfloat-java (>= 1.10.1)

  high performance arbitrary precision arithmetic library for Java

• dep: libbiojava6-java

  Java API to biological data and applications (version 6)

• dep: libcharts4j-java (>= 1.3)

  free, lightweight charts and graphs Java API

• dep: libcommons-cli-java (>= 1.5.0)

  Command line arguments and options parsing library

• dep: libcommons-codec-java (>= 1.15)

  encoder and decoders such as Base64 and hexadecimal codec

• dep: libcommons-io-java (>= 2.11.0)

  Common useful IO related classes

• dep: libcommons-math3-java (>= 3.6.1)

  Java lightweight mathematics and statistics components

• dep: libdistlib-java (>= 1.0)

  Java library of statistical distribution functions

• dep: libfreemarker-java

  template engine written in Java

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: libtrove3-java

  high performance collections for java

• sug: libsnpeff-java-doc

  Documentation for Snp Effect

Imuroi libsnpeff-java

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	2,099.5 kt	19,874.0 kt	[tiedostoluettelo]