Paketti: concavity (0.1+dfsg.1-5)

[ Source: concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Muut pakettiin concavity liittyvät paketit

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 5)

  GNU standardi C++ -kirjasto, versio 3

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  Molecular Graphics System

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
mipsel	259.2 kt	1,112.0 kt	[tiedostoluettelo]