Paketti: brig (0.95+dfsg-3)

[ Source: brig  ]

BLAST Ring Image Generator

BRIG can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.

 * Images show similarity between a central reference sequence and other
   sequences as concentric rings.
 * BRIG will perform all BLAST comparisons and file parsing automatically
   via a simple GUI.
 * Contig boundaries and read coverage can be displayed for draft genomes;
   customized graphs and annotations can be displayed.
 * Using a user-defined set of genes as input, BRIG can display gene
   presence, absence, truncation or sequence variation in a set of
   complete genomes, draft genomes or even raw, unassembled sequence data.
 * BRIG also accepts SAM-formatted read-mapping files enabling genomic
   regions present in unassembled sequence data from multiple samples to
   be compared simultaneously

Muut pakettiin brig liittyvät paketit

• dep: cgview

  Circular Genome Viewer

• dep: default-jre

  Standard Java or Java compatible Runtime

  tai java6-runtime

  näennäispaketti, jonka toteuttaa default-jre, openjdk-17-jre

  tai java7-runtime

  näennäispaketti, jonka toteuttaa default-jre, openjdk-17-jre

  tai java8-runtime

  näennäispaketti, jonka toteuttaa default-jre, openjdk-17-jre

  tai java9-runtime

  näennäispaketti, jonka toteuttaa default-jre, openjdk-17-jre

  tai java10-runtime

  näennäispaketti, jonka toteuttaa default-jre, openjdk-17-jre

  tai java11-runtime

  näennäispaketti, jonka toteuttaa default-jre, openjdk-17-jre

• dep: jarwrapper (>= 0.5)

  Run executable Java .jar files

• dep: libjdom1-java

  lightweight and fast library using XML

• dep: libswing-layout-java

  Extensions to Swing layout

Imuroi brig

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
mipsel	112.0 kt	412.0 kt	[tiedostoluettelo]