Paketti: r-bioc-cummerbund (2.40.0-1)

[ Source: r-bioc-cummerbund  ]

tool for analysis of Cufflinks RNA-Seq output

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

Muut pakettiin r-bioc-cummerbund liittyvät paketit

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.3.2)

  generic functions for Bioconductor

• dep: r-bioc-gviz

  Plotting data and annotation information along genomic coordinates

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-fastcluster

  Fast hierarchical clustering routines for GNU R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rsqlite

  Database Interface R driver for SQLite

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-cran-cluster

  GNU R package for cluster analysis by Rousseeuw et al

• sug: r-cran-rjson

  GNU R package for converting between R and JSON objects

• sug: r-cran-stringr

  Make it easier to work with strings

Imuroi r-bioc-cummerbund

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	2,496.9 kt	9,891.0 kt	[tiedostoluettelo]